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A Novel Tool for the Generation of Conditional Knockouts To Study Gene Function across the Plasmodium falciparum Life Cycle.

Identifieur interne : 000403 ( Main/Exploration ); précédent : 000402; suivant : 000404

A Novel Tool for the Generation of Conditional Knockouts To Study Gene Function across the Plasmodium falciparum Life Cycle.

Auteurs : Marta Tibúrcio [Royaume-Uni] ; Annie S P. Yang [Pays-Bas] ; Kazuhide Yahata [Royaume-Uni, Japon] ; Pablo Suárez-Cortés [Allemagne] ; Hugo Belda [Royaume-Uni] ; Sebastian Baumgarten [France] ; Marga Van De Vegte-Bolmer [Pays-Bas] ; Geert-Jan Van Gemert [Pays-Bas] ; Youri Van Waardenburg [Pays-Bas] ; Elena A. Levashina [Allemagne] ; Robert W. Sauerwein [Pays-Bas] ; Moritz Treeck [Royaume-Uni]

Source :

RBID : pubmed:31530668

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English descriptors

Abstract

Plasmodium falciparum has a complex life cycle that involves interaction with multiple tissues inside the human and mosquito hosts. Identification of essential genes at all different stages of the P. falciparum life cycle is urgently required for clinical development of tools for malaria control and eradication. However, the study of P. falciparum is limited by the inability to genetically modify the parasite throughout its life cycle with the currently available genetic tools. Here, we describe the detailed characterization of a new marker-free P. falciparum parasite line that expresses rapamycin-inducible Cre recombinase across the full life cycle. Using this parasite line, we were able to conditionally delete the essential invasion ligand AMA1 in three different developmental stages for the first time. We further confirm efficient gene deletion by targeting the nonessential kinase FIKK7.1.IMPORTANCE One of the major limitations in studying P. falciparum is that so far only asexual stages are amenable to rapid conditional genetic modification. The most promising drug targets and vaccine candidates, however, have been refractory to genetic modification because they are essential during the blood stage or for transmission in the mosquito vector. This leaves a major gap in our understanding of parasite proteins in most life cycle stages and hinders genetic validation of drug and vaccine targets. Here, we describe a method that supports conditional gene deletion across the P. falciparum life cycle for the first time. We demonstrate its potential by deleting essential and nonessential genes at different parasite stages, which opens up completely new avenues for the study of malaria and drug development. It may also allow the realization of novel vaccination strategies using attenuated parasites.

DOI: 10.1128/mBio.01170-19
PubMed: 31530668
PubMed Central: PMC6751054


Affiliations:


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Le document en format XML

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<term>Gene Deletion (MeSH)</term>
<term>Gene Knockout Techniques (MeSH)</term>
<term>Genes, Protozoan (MeSH)</term>
<term>Integrases (genetics)</term>
<term>Life Cycle Stages (genetics)</term>
<term>Molecular Biology (methods)</term>
<term>Mosquito Vectors (MeSH)</term>
<term>Phenotype (MeSH)</term>
<term>Plasmodium falciparum (enzymology)</term>
<term>Plasmodium falciparum (genetics)</term>
<term>Sirolimus (MeSH)</term>
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<term>Biologie moléculaire (méthodes)</term>
<term>Délétion de gène (MeSH)</term>
<term>Gènes de protozoaire (MeSH)</term>
<term>Integrases (génétique)</term>
<term>Phénotype (MeSH)</term>
<term>Plasmodium falciparum (enzymologie)</term>
<term>Plasmodium falciparum (génétique)</term>
<term>Sirolimus (MeSH)</term>
<term>Techniques de knock-out de gènes (MeSH)</term>
<term>Vecteurs moustiques (MeSH)</term>
<term>Étapes du cycle de vie (génétique)</term>
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<term>Integrases</term>
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<term>Plasmodium falciparum</term>
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<term>Plasmodium falciparum</term>
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<term>Life Cycle Stages</term>
<term>Plasmodium falciparum</term>
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<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
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<term>Plasmodium falciparum</term>
<term>Étapes du cycle de vie</term>
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<term>Gene Deletion</term>
<term>Gene Knockout Techniques</term>
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<term>Phenotype</term>
<term>Sirolimus</term>
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<term>Gènes de protozoaire</term>
<term>Phénotype</term>
<term>Sirolimus</term>
<term>Techniques de knock-out de gènes</term>
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<front>
<div type="abstract" xml:lang="en">
<i>Plasmodium falciparum</i>
has a complex life cycle that involves interaction with multiple tissues inside the human and mosquito hosts. Identification of essential genes at all different stages of the
<i>P. falciparum</i>
life cycle is urgently required for clinical development of tools for malaria control and eradication. However, the study of
<i>P. falciparum</i>
is limited by the inability to genetically modify the parasite throughout its life cycle with the currently available genetic tools. Here, we describe the detailed characterization of a new marker-free
<i>P. falciparum</i>
parasite line that expresses rapamycin-inducible Cre recombinase across the full life cycle. Using this parasite line, we were able to conditionally delete the essential invasion ligand AMA1 in three different developmental stages for the first time. We further confirm efficient gene deletion by targeting the nonessential kinase FIKK7.1.
<b>IMPORTANCE</b>
One of the major limitations in studying
<i>P. falciparum</i>
is that so far only asexual stages are amenable to rapid conditional genetic modification. The most promising drug targets and vaccine candidates, however, have been refractory to genetic modification because they are essential during the blood stage or for transmission in the mosquito vector. This leaves a major gap in our understanding of parasite proteins in most life cycle stages and hinders genetic validation of drug and vaccine targets. Here, we describe a method that supports conditional gene deletion across the
<i>P. falciparum</i>
life cycle for the first time. We demonstrate its potential by deleting essential and nonessential genes at different parasite stages, which opens up completely new avenues for the study of malaria and drug development. It may also allow the realization of novel vaccination strategies using attenuated parasites.</div>
</front>
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<Year>2020</Year>
<Month>05</Month>
<Day>19</Day>
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<DateRevised>
<Year>2020</Year>
<Month>05</Month>
<Day>19</Day>
</DateRevised>
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<Journal>
<ISSN IssnType="Electronic">2150-7511</ISSN>
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<Volume>10</Volume>
<Issue>5</Issue>
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<Year>2019</Year>
<Month>09</Month>
<Day>17</Day>
</PubDate>
</JournalIssue>
<Title>mBio</Title>
<ISOAbbreviation>mBio</ISOAbbreviation>
</Journal>
<ArticleTitle>A Novel Tool for the Generation of Conditional Knockouts To Study Gene Function across the Plasmodium falciparum Life Cycle.</ArticleTitle>
<ELocationID EIdType="pii" ValidYN="Y">e01170-19</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1128/mBio.01170-19</ELocationID>
<Abstract>
<AbstractText>
<i>Plasmodium falciparum</i>
has a complex life cycle that involves interaction with multiple tissues inside the human and mosquito hosts. Identification of essential genes at all different stages of the
<i>P. falciparum</i>
life cycle is urgently required for clinical development of tools for malaria control and eradication. However, the study of
<i>P. falciparum</i>
is limited by the inability to genetically modify the parasite throughout its life cycle with the currently available genetic tools. Here, we describe the detailed characterization of a new marker-free
<i>P. falciparum</i>
parasite line that expresses rapamycin-inducible Cre recombinase across the full life cycle. Using this parasite line, we were able to conditionally delete the essential invasion ligand AMA1 in three different developmental stages for the first time. We further confirm efficient gene deletion by targeting the nonessential kinase FIKK7.1.
<b>IMPORTANCE</b>
One of the major limitations in studying
<i>P. falciparum</i>
is that so far only asexual stages are amenable to rapid conditional genetic modification. The most promising drug targets and vaccine candidates, however, have been refractory to genetic modification because they are essential during the blood stage or for transmission in the mosquito vector. This leaves a major gap in our understanding of parasite proteins in most life cycle stages and hinders genetic validation of drug and vaccine targets. Here, we describe a method that supports conditional gene deletion across the
<i>P. falciparum</i>
life cycle for the first time. We demonstrate its potential by deleting essential and nonessential genes at different parasite stages, which opens up completely new avenues for the study of malaria and drug development. It may also allow the realization of novel vaccination strategies using attenuated parasites.</AbstractText>
<CopyrightInformation>Copyright © 2019 Tibúrcio et al.</CopyrightInformation>
</Abstract>
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<Author ValidYN="Y">
<LastName>Tibúrcio</LastName>
<ForeName>Marta</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Yang</LastName>
<ForeName>Annie S P</ForeName>
<Initials>ASP</Initials>
<AffiliationInfo>
<Affiliation>Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Yahata</LastName>
<ForeName>Kazuhide</ForeName>
<Initials>K</Initials>
<AffiliationInfo>
<Affiliation>Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom.</Affiliation>
</AffiliationInfo>
<AffiliationInfo>
<Affiliation>Department of Protozoology, Institute of Tropical Medicine (NEKKEN), Nagasaki University, Nagasaki, Japan.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Suárez-Cortés</LastName>
<ForeName>Pablo</ForeName>
<Initials>P</Initials>
<AffiliationInfo>
<Affiliation>Vector Biology Unit, Max Planck Institute for Infection Biology, Berlin, Germany.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Belda</LastName>
<ForeName>Hugo</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Baumgarten</LastName>
<ForeName>Sebastian</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Biology of Host-Parasite Interactions Unit, Institut Pasteur, Paris, France.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>van de Vegte-Bolmer</LastName>
<ForeName>Marga</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>van Gemert</LastName>
<ForeName>Geert-Jan</ForeName>
<Initials>GJ</Initials>
<AffiliationInfo>
<Affiliation>Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>van Waardenburg</LastName>
<ForeName>Youri</ForeName>
<Initials>Y</Initials>
<AffiliationInfo>
<Affiliation>Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Levashina</LastName>
<ForeName>Elena A</ForeName>
<Initials>EA</Initials>
<AffiliationInfo>
<Affiliation>Vector Biology Unit, Max Planck Institute for Infection Biology, Berlin, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sauerwein</LastName>
<ForeName>Robert W</ForeName>
<Initials>RW</Initials>
<AffiliationInfo>
<Affiliation>Department of Medical Microbiology, Radboud University Medical Centre, Nijmegen, Netherlands.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Treeck</LastName>
<ForeName>Moritz</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Signalling in Apicomplexan Parasites Laboratory, The Francis Crick Institute, London, United Kingdom moritz.treeck@crick.ac.uk.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>FC001189</GrantID>
<Acronym>CRUK_</Acronym>
<Agency>Cancer Research UK</Agency>
<Country>United Kingdom</Country>
</Grant>
<Grant>
<GrantID>FC001189</GrantID>
<Acronym>MRC_</Acronym>
<Agency>Medical Research Council</Agency>
<Country>United Kingdom</Country>
</Grant>
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<Year>2019</Year>
<Month>09</Month>
<Day>17</Day>
</ArticleDate>
</Article>
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<MedlineTA>mBio</MedlineTA>
<NlmUniqueID>101519231</NlmUniqueID>
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<Chemical>
<RegistryNumber>EC 2.7.7.-</RegistryNumber>
<NameOfSubstance UI="C045073">Cre recombinase</NameOfSubstance>
</Chemical>
<Chemical>
<RegistryNumber>EC 2.7.7.-</RegistryNumber>
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</Chemical>
<Chemical>
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<NameOfSubstance UI="D020123">Sirolimus</NameOfSubstance>
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</MeshHeading>
<MeshHeading>
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</MeshHeading>
<MeshHeading>
<DescriptorName UI="D017125" MajorTopicYN="Y">Genes, Protozoan</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D019426" MajorTopicYN="N">Integrases</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008018" MajorTopicYN="N">Life Cycle Stages</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008967" MajorTopicYN="N">Molecular Biology</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000072138" MajorTopicYN="N">Mosquito Vectors</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D010641" MajorTopicYN="N">Phenotype</DescriptorName>
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<Keyword MajorTopicYN="Y">molecular methods</Keyword>
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